Querying Across Genres for Medical Claims in News

30863

Authors

nan

Abstract

AbstractWe present a query-based biomedical information retrieval task across two vastly different genres – newswire and research literature – where the goal is to find the research publication that supports the primary claim made in a health-related news article. For this task, we present a new dataset of 5,034 claims from news paired with research abstracts. Our approach consists of two steps: (i) selecting the most relevant candidates from a collection of 222k research abstracts, and (ii) re-ranking this list. We compare the classical IR approach using BM25 with more recent transformer-based models. Our results show that cross-genre medical IR is a viable task, but incorporating domain-specific knowledge is crucial.

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Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing, pages 171–182, November 16–20, 2020. c⃝2020 Association for Computational Linguistics 171 A Matter of Framing: The Impact of Linguistic Formalism on Probing Results Ilia Kuznetsov and Iryna Gurevych Ubiquitous Knowledge Processing Lab (UKP-TUDA) Department of Computer Science, Technische Universit¨at Darmstadt http://www.ukp.tu-darmstadt.de/ Abstract Deep pre-trained contextualized encoders like BERT (Devlin et al., 2019) demonstrate re- markable performance on a range of down- stream tasks. A recent line of research in prob- ing investigates the linguistic knowledge im- plicitly learned by these models during pre- training. While most work in probing oper- ates on the task level, linguistic tasks are rarely uniform and can be represented in a variety of formalisms. Any linguistics-based probing study thereby inevitably commits to the for- malism used to annotate the underlying data. Can the choice of formalism affect probing re- sults? To investigate, we conduct an in-depth cross-formalism layer probing study in role se- mantics. We find linguistically meaningful dif- ferences in the encoding of semantic role- and proto-role information by BERT depending on the formalism and demonstrate that layer prob- ing can detect subtle differences between the implementations of the same linguistic formal- ism. Our results suggest that linguistic formal- ism is an important dimension in probing stud- ies and should be investigated along with the commonly used cross-task and cross-lingual experimental settings. 1 Introduction The emergence of deep pre-trained contextualized encoders has had a major impact on the field of nat- ural language processing. Boosted by the availabil- ity of general-purpose frameworks like AllenNLP (Gardner et al., 2018) and Transformers (Wolf et al., 2019), pre-trained models like ELMO (Pe- ters et al., 2018) and BERT (Devlin et al., 2019) have caused a shift towards simple architectures where a strong pre-trained encoder is paired with a shallow downstream model, often outperforming the intricate task-specific architectures of the past. The versatility of pre-trained representations im- plies that they encode some aspects of general We asked John to leave . L=0 L=8 L=11 Figure 1: Intra-sentence similarity by layer L of the multilingual BERT-base. Functional tokens are similar in L = 0, syntactic groups emerge at higher levels. linguistic knowledge (Reif et al., 2019). Indeed, even an informal inspection of layer-wise intra- sentence similarities (Fig. 1) suggests that these models capture elements of linguistic structure, and those differ depending on the layer of the model. A grounded investigation of these regularities al- lows to interpret the model’s behaviour, design better pre-trained encoders and inform the down- stream model development. Such investigation is the main subject of probing, and recent studies con- firm that BERT implicitly captures many aspects of language use, lexical semantics and grammar (Rogers et al., 2020). Most probing studies use linguistics as a theoret- ical scaffolding and operate on a task level. How- ever, there often exist multiple ways to represent the same linguistic phenomenon: for example, En- glish dependency syntax can be encoded using a variety of formalisms, incl. Universal (Schuster …

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Labeled Text

AbstractWe present a query-based biomedical information retrieval task across two vastly different genres – newswire and research literature – where the goal is to find the research publication that supports the primary claim made in a health-related news article. For this task, we present a new dataset of 5,034 claims from news paired with research abstracts. Our approach consists of two steps: (i) selecting the most relevant candidates from a collection of 222k research abstracts, and (ii) re-ranking this list. We compare the classical IR approach using BM25 with more recent transformer-based models. Our results show that cross-genre medical IR is a viable task, but incorporating domain-specific knowledge is crucial.

Publication Details

Paper ID:
30863
Year:
2020
Publication:
TIPSTER
Publication Type:
conf
DOI:
nan