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Pronominal and Sortal Anaphora Resolution for Biomedical Literature
. Anaphora resolution is one of essential tasks in message understanding. In this paper resolution for pronominal and sortal anaphora, which are common in biomedical texts, is addressed. The resolution …...
A Study: From Electronic Laboratory Notebooks to Generated Queries for Literature Recommendation
Relating one’s research to the vast body of scientific knowledge is a difficult task; the sheer volume of literature makes it diffi- cult to keep up-to-date with scientific de- velopments. …...
Medical Concept Embeddings via Labeled Background Corpora
AbstractIn recent years, we have seen an increasing amount of interest in low-dimensional vector representations of words. Among other things, these facilitate computing word similarity and relatedness scores. The most …...
Discourse-Aware Unsupervised Summarization for Long Scientific Documents
AbstractWe propose an unsupervised graph-based ranking model for extractive summarization of long scientific documents. Our method assumes a two-level hierarchical graph representation of the source document, and exploits asymmetrical positional …...
Extracting a Knowledge Base of Mechanisms from COVID-19 Papers
AbstractThe COVID-19 pandemic has spawned a diverse body of scientific literature that is challenging to navigate, stimulating interest in automated tools to help find useful knowledge. We pursue the construction …...
BioReader: a Retrieval-Enhanced Text-to-Text Transformer for Biomedical Literature
AbstractThe latest batch of research has equipped language models with the ability to attend over relevant and factual information from non-parametric external sources, drawing a complementary path to architectural scaling. …...
Factorizing Content and Budget Decisions in Abstractive Summarization of Long Documents
AbstractWe argue that disentangling content selection from the budget used to cover salient content improves the performance and applicability of abstractive summarizers. Our method, FactorSum, does this disentanglement by factorizing …...
HeterGraphLongSum: Heterogeneous Graph Neural Network with Passage Aggregation for Extractive Long Document Summarization
AbstractGraph Neural Network (GNN)-based models have proven effective in various Natural Language Processing (NLP) tasks in recent years. Specifically, in the case of the Extractive Document Summarization (EDS) task, modeling …...
MeSHup: Corpus for Full Text Biomedical Document Indexing
AbstractMedical Subject Heading (MeSH) indexing refers to the problem of assigning a given biomedical document with the most relevant labels from an extremely large set of MeSH terms. Currently, the …...
Predicting Intervention Approval in Clinical Trials through Multi-Document Summarization
AbstractClinical trials offer a fundamental opportunity to discover new treatments and advance the medical knowledge. However, the uncertainty of the outcome of a trial can lead to unforeseen costs and …...
LongEval: Guidelines for Human Evaluation of Faithfulness in Long-form Summarization
AbstractWhile human evaluation remains best practice for accurately judging the faithfulness of automatically-generated summaries, few solutions exist to address the increased difficulty and workload when evaluating long-form summaries. Through a …...