otherentity ID: genes

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AbstractNamed entity recognition (NER) identifies typed entity mentions in raw text. While the task is well-established, there is no universally used tagset: often, datasets are annotated for use in downstream …...

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Automatic Term Name Generation for Gene Ontology: Task and Dataset

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AbstractTerms contained in Gene Ontology (GO) have been widely used in biology and bio-medicine. Most previous research focuses on inferring new GO terms, while the term names that reflect the …...

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Transformers and the Representation of Biomedical Background Knowledge

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AbstractSpecialized transformers-based models (such as BioBERT and BioMegatron) are adapted for the biomedical domain based on publicly available biomedical corpora. As such, they have the potential to encode large-scale biological …...

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